{
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  "Package": "MEAanalysis",
  "Version": "0.1.0",
  "Title": "Analyse and Visualise Multi Electrode Array Burst Data",
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  "Maintainer": "Emily Gordon <emily.gordon@wadham.ox.ac.uk>",
  "Description": "Analyse and visualise multi electrode array data at the\nsingle electrode and whole well level, downstream of 'AxIS\nNavigator 3.6.2 Software' processing. Compare bursting\nparameters between time intervals and recordings using the bar\nchart visualisation functions. Compatible with 12- and 24- well\nplates.",
  "License": "GPL (>= 2)",
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  "BugReports": "https://github.com/egordon2/MEA-analysis-package/issues",
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  "Repository": "https://egordon2.r-universe.dev",
  "Date/Publication": "2025-05-02 14:41:50 UTC",
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    "electrode_burst_duration",
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    "single_electrode_barchart",
    "well_barchart",
    "well_burst_duration",
    "well_mean_burst_ISI",
    "well_number_of_bursts",
    "well_spikes_per_burst"
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      "name": "input_electrode_barchart",
      "title": "Input dataset for single_electrode_barchart function",
      "object": "input_electrode_barchart",
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        "data.frame"
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        "Recording_identifier",
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        "electrode_duration_mean: burst_recording_1 0-30 (s)",
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        "electrode_duration_raw: burst_recording_2 60-90 (s)",
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        "electrode_spikes_mean: burst_recording_1 0-30 (s)",
        "electrode_spikes_sd: burst_recording_1 0-30 (s)",
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        "electrode_spikes_mean: burst_recording_2 60-90 (s)",
        "electrode_spikes_sd: burst_recording_2 60-90 (s)",
        "electrode_spikes_se: burst_recording_2 60-90 (s)",
        "electrode_raw_mean_burst_ISI: burst_recording_1 0-30 (s)",
        "electrode_avg_mean_burst_ISI: burst_recording_1 0-30 (s)",
        "electrode_sd_mean_burst_ISI: burst_recording_1 0-30 (s)",
        "electrode_se_mean_burst_ISI: burst_recording_1 0-30 (s)",
        "electrode_raw_mean_burst_ISI: burst_recording_1 30-60 (s)",
        "electrode_avg_mean_burst_ISI: burst_recording_1 30-60 (s)",
        "electrode_sd_mean_burst_ISI: burst_recording_1 30-60 (s)",
        "electrode_se_mean_burst_ISI: burst_recording_1 30-60 (s)",
        "electrode_raw_mean_burst_ISI: burst_recording_1 60-90 (s)",
        "electrode_avg_mean_burst_ISI: burst_recording_1 60-90 (s)",
        "electrode_sd_mean_burst_ISI: burst_recording_1 60-90 (s)",
        "electrode_se_mean_burst_ISI: burst_recording_1 60-90 (s)",
        "electrode_raw_mean_burst_ISI: burst_recording_2 60-90 (s)",
        "electrode_avg_mean_burst_ISI: burst_recording_2 60-90 (s)",
        "electrode_sd_mean_burst_ISI: burst_recording_2 60-90 (s)",
        "electrode_se_mean_burst_ISI: burst_recording_2 60-90 (s)",
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        "electrode_number_of_bursts: burst_recording_2 60-90 (s)"
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        "data.frame"
      ],
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        "synchrony_index: Baseline",
        "synchrony_index: Agonist Challenge"
      ],
      "rows": 24,
      "table": true,
      "tojson": true
    },
    {
      "name": "input_MEA_data",
      "title": "Input dataset for electrode and well MEA parameter functions.",
      "object": "input_MEA_data",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "Electrode",
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        "well_duration_mean: burst_recording_1 0-30 (s)",
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        "well_avg_mean_burst_ISI: burst_recording_1 0-30 (s)",
        "well_sd_mean_burst_ISI: burst_recording_1 0-30 (s)",
        "well_se_mean_burst_ISI: burst_recording_1 0-30 (s)",
        "well_raw_mean_burst_ISI: burst_recording_1 30-60 (s)",
        "well_avg_mean_burst_ISI: burst_recording_1 30-60 (s)",
        "well_sd_mean_burst_ISI: burst_recording_1 30-60 (s)",
        "well_se_mean_burst_ISI: burst_recording_1 30-60 (s)",
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        "well_avg_mean_burst_ISI: burst_recording_1 60-90 (s)",
        "well_sd_mean_burst_ISI: burst_recording_1 60-90 (s)",
        "well_se_mean_burst_ISI: burst_recording_1 60-90 (s)",
        "well_raw_mean_burst_ISI: burst_recording_2 60-90 (s)",
        "well_avg_mean_burst_ISI: burst_recording_2 60-90 (s)",
        "well_sd_mean_burst_ISI: burst_recording_2 60-90 (s)",
        "well_se_mean_burst_ISI: burst_recording_2 60-90 (s)",
        "well_burst_count_raw: burst_recording_1 0-30 (s)",
        "well_burst_count_mean: burst_recording_1 0-30 (s)",
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      "page": "create_electrode_dataset",
      "title": "Create Electrode Data Set",
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      "page": "create_synchrony_dataset",
      "title": "Create Synchrony Data Set",
      "topics": [
        "create_synchrony_dataset"
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        "electrode_burst_duration"
      ]
    },
    {
      "page": "electrode_mean_burst_ISI",
      "title": "Electrode Mean Burst ISI",
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        "electrode_mean_burst_ISI"
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      "page": "electrode_number_of_bursts",
      "title": "Electrode Number of Bursts",
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        "electrode_number_of_bursts"
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    },
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      "page": "electrode_spikes_per_burst",
      "title": "Electrode Spikes per Burst",
      "topics": [
        "electrode_spikes_per_burst"
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    },
    {
      "page": "input_electrode_barchart",
      "title": "Input dataset for single_electrode_barchart function",
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        "input_electrode_barchart"
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    },
    {
      "page": "input_heatmap_data",
      "title": "Input dataset for MEA_heatmap function",
      "topics": [
        "input_heatmap_data"
      ]
    },
    {
      "page": "input_MEA_data",
      "title": "Input dataset for electrode and well MEA parameter functions.",
      "topics": [
        "input_MEA_data"
      ]
    },
    {
      "page": "input_well_barchart",
      "title": "Input dataset for well_barchart function",
      "topics": [
        "input_well_barchart"
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    },
    {
      "page": "MEA_heatmap",
      "title": "MEA_heatmap",
      "topics": [
        "MEA_heatmap"
      ]
    },
    {
      "page": "single_electrode_barchart",
      "title": "Single Electrode Bar chart",
      "topics": [
        "single_electrode_barchart"
      ]
    },
    {
      "page": "well_barchart",
      "title": "Well Bar chart",
      "topics": [
        "well_barchart"
      ]
    },
    {
      "page": "well_burst_duration",
      "title": "Well Burst Duration",
      "topics": [
        "well_burst_duration"
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      "title": "Well Mean Burst ISI",
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        "well_mean_burst_ISI"
      ]
    },
    {
      "page": "well_number_of_bursts",
      "title": "Well Number of Bursts",
      "topics": [
        "well_number_of_bursts"
      ]
    },
    {
      "page": "well_spikes_per_burst",
      "title": "Well Spikes per Burst",
      "topics": [
        "well_spikes_per_burst"
      ]
    }
  ],
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